1. “Travis, Anthony J., et al. “Hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data.” Methods 65.3 (2014): 263-273.”
  2. Gay, Lauren A., et al. “Modified cross-linking, ligation, and sequencing of hybrids (qCLASH) identifies Kaposi’s Sarcoma-associated herpesvirus microRNA targets in endothelial cells.” Journal of virology 92.8 (2018): e02138-17.
  3. The Vienna File Format:


Renne Lab

Principal Investigator: Rolf Renne
Henry E. Innes Professor of Cancer Research
University of Florida
UF Health Cancer Center
UF Department of Molecular Genetics and Microbiology
UF Genetics Institute

Lead Developer


  • 0.1.9 Fix for Module Path Finding for Python > 3.6
  • 0.1.8 Streamlining, PyPI / PIP Initial Release
  • 0.1.0 (-present) Beta Implementation