hybkit API
The hybkit API provides a Python3 module with classes allowing parsing and manipulation of hyb-format data as python objects, including built-in analysis and plotting functionality for common tasks in hybrid sequence analysis.
Data classes for storing, evaluating, and iterating over records
Constants and settings information for hybkit classes and toolkit scripts
Class for customizable identification of segment type from reference identifiers
Classes for predefined analyses of hyb records
Plotting methods for analysis results
Support methods for executable scripts
Error classes for the hybkit package
- hybkit (module)
- hybkit.type_finder
- hybkit.analysis
- hybkit.plot
COLOR_DICT
COLOR_LIST
ENERGY_HIST_RC_PARAMS
TYPE_PIE_SINGLE_RC_PARAMS
TYPE_PIE_DUAL_RC_PARAMS
TARGET_PIE_RC_PARAMS
FOLD_MATCH_HIST_RC_PARAMS
FOLD_NT_COUNTS_HIST_RC_PARAMS
PIE_DEFAULTS
BAR_DEFAULTS
BAR_INT_DEFAULTS
ENERGY_DEFAULTS
energy_histogram()
type_count()
type_count_dual()
target_count()
fold_match_counts_histogram()
fold_mirna_nt_counts_histogram()
- hybkit.settings
HYB_SUFFIXES
VIENNA_SUFFIXES
CT_SUFFIXES
FOLD_SUFFIXES
MIRNA_TYPES
HybRecord_settings_info
HybFile_settings_info
FoldRecord_settings_info
FoldFile_settings_info
HybFoldIter_settings_info
Analysis_settings_info
HybRecord_settings
HybFile_settings
FoldRecord_settings
FoldFile_settings
HybFoldIter_settings
Analysis_settings
- hybkit.util
- hybkit.errors