hybkit API
The hybkit API provides a Python3 module with classes allowing parsing and manipulation of hyb-format data as python objects, including built-in analysis and plotting functionality for common tasks in hybrid sequence analysis.
Data classes for storing, evaluating, and iterating over records
Constants and settings information for hybkit classes and toolkit scripts
Class for customizable identification of segment type from reference identifiers
Classes for predefined analyses of hyb records
Plotting methods for analysis results
Support methods for executable scripts
Error classes for the hybkit package
- hybkit (module)
- hybkit.type_finder
- hybkit.analysis
- hybkit.plot
COLOR_DICTCOLOR_LISTENERGY_HIST_RC_PARAMSTYPE_PIE_SINGLE_RC_PARAMSTYPE_PIE_DUAL_RC_PARAMSTARGET_PIE_RC_PARAMSFOLD_MATCH_HIST_RC_PARAMSFOLD_NT_COUNTS_HIST_RC_PARAMSPIE_DEFAULTSBAR_DEFAULTSBAR_INT_DEFAULTSENERGY_DEFAULTSenergy_histogram()type_count()type_count_dual()target_count()fold_match_counts_histogram()fold_mirna_nt_counts_histogram()
- hybkit.settings
HYB_SUFFIXESVIENNA_SUFFIXESCT_SUFFIXESFOLD_SUFFIXESMIRNA_TYPESHybRecord_settings_infoHybFile_settings_infoFoldRecord_settings_infoFoldFile_settings_infoHybFoldIter_settings_infoAnalysis_settings_infoHybRecord_settingsHybFile_settingsFoldRecord_settingsFoldFile_settingsHybFoldIter_settingsAnalysis_settings
- hybkit.util
- hybkit.errors